PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142419001
Common NameGSBRNA2T00142419001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 355aa    MW: 39257.5 Da    PI: 9.9772
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142419001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.91e-1268116155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+ ++ a+++++g
  GSBRNA2T00142419001  68 SKFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAASYDIAARRFRG 116
                          79****9888.8*********3.....5*************************98 PP

2B3100.21.3e-31179288195
                          EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                          f+k+ tpsdv+k++rlv+pk++ae+h                 ++++++ + led+ g++W+++++y+++s++yvltkGW++Fvk+++L+
  GSBRNA2T00142419001 179 FEKAVTPSDVGKLNRLVIPKQHAEKHfplpamttatvvaamTPSPTKGVLINLEDRMGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLR 268
                          89****************************999999999985567799****************************************** PP

                          TT-EEEEEE-SSSEE..EEE CS
                   B3  76 egDfvvFkldgrsefelvvk 95 
                          +gD+v F+++   +++l++ 
  GSBRNA2T00142419001 269 AGDVVCFERSTGPDRQLYID 288
                          ********876677767665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.08E-2568123No hitNo description
PfamPF008477.8E-768116IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-1668124IPR016177DNA-binding domain
PROSITE profilePS5103219.45469124IPR001471AP2/ERF domain
SMARTSM003802.0E-2769130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1969124IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.109.0E-40174293IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-31177282IPR015300DNA-binding pseudobarrel domain
CDDcd100174.06E-29178278No hitNo description
SMARTSM010191.5E-24179293IPR003340B3 DNA binding domain
PROSITE profilePS5086313.704179293IPR003340B3 DNA binding domain
PfamPF023622.3E-28179288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDNSCIDDST SNTSGSLSTS TPSAKKKLSP PPPPPATMRL YRMGSGGSSV VLDSENGVET  60
ESRKLPSSKF KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE EEAAASYDIA ARRFRGRDAV  120
TNFKSPAIDG TDAESAFLEA HSKAEIVDML RKHTYADELQ QSKRKFLDGN GKRAREVLFE  180
KAVTPSDVGK LNRLVIPKQH AEKHFPLPAM TTATVVAAMT PSPTKGVLIN LEDRMGKVWR  240
FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVCFERSTG PDRQLYIDWK VQSGTEEITP  300
VQSVVRLFGV NIFNATTNAK PNDVAVECGG KKRSREVDLF ALGCSKKQTM INAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-5817629611121DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.52061e-136flower| leaf| seed
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142419001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637910.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like
SwissprotQ9C6M50.0RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A078D9Q30.0A0A078D9Q3_BRANA; BnaC05g20560D protein
STRINGBra024735.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.10.0RAV family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]